logit_cm <- confusionMatrix(data=logitresp, reference=actual)
logit <- glm(Outcome ~ ., family = binomial (link = logit),
data = training_data)
Returns:
Error: data and reference should be factors with the same levels.
They are of the same number of lines and same data type, I don’t know why caret wont work with them.
For:
> str(logitresp)
num [1:384] 0.1128 0.0964 0.3948 0.4793 0.4889 ...
> str(actual)
num [1:384] 0 0 1 1 1 0 0 1 0 0 ...
dput(training_data)
structure(list(Pregnancies = c(6, 1, 8, 1, 0, 5, 3, 10, 2, 8,
4, 10, 10, 1, 5, 7, 0, 7, 1, 1, 3, 8, 7, 9, 11, 10, 7, 1, 13,
5, 5, 3, 3, 6, 10, 4, 11, 9, 2, 4, 3, 7, 7, 9, 7, 0, 1, 2, 7,
7, 1, 1, 5, 8, 7, 1, 7, 0, 0, 0, 2, 8, 5, 2, 7, 5, 0, 2, 1, 4,
2, 5, 13, 4, 1, 1, 7, 5, 0, 2, 3, 2, 7, 0, 5, 2, 13, 2, 15, 1,
1, 4, 7, 4, 2, 6, 2, 1, 6, 1, 1, 1, 0, 1, 2, 1, 1, 4, 3, 0, 3,
8, 1, 4, 7, 4, 5, 5, 4, 4, 0, 6, 2, 5, 0, 1, 3, 1, 1, 0, 4, 9,
3, 8, 2, 2, 0, 0, 0, 5, 3, 5, 2, 10, 4, 0, 9, 2, 5, 2, 1, 4,
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2, 1, 2, 8, 6, 0, 5, 5, 6, 0, 1, 5, 4, 7, 8, 1, 8, 5, 3, 9, 7,
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1, 0, 6, 2, 0, 14, 8, 0, 2, 5, 5, 3, 2, 10, 0, 0, 2, 6, 0, 2,
3, 7, 2, 3, 3, 3, 6, 4, 3, 0, 13, 2, 1, 1, 10, 2, 6, 8, 2, 1,
12, 1, 0, 0, 5, 9, 7, 1, 1, 1, 5, 8, 8, 1, 3, 3, 5, 4, 4, 3,
1, 3, 9, 1, 13, 12, 1, 5, 5, 5, 4, 4, 5, 6, 0, 3, 1, 3, 0, 0,
2, 2, 12, 0, 1, 4, 0, 1, 0, 1, 1), Glucose = c(148, 85, 183,
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139, 116, 99, 0, 92, 137, 61, 90, 90, 165, 125, 129, 88, 196,
189, 158, 103, 146, 147, 99, 124, 101, 81, 133, 173, 118, 84,
105, 122, 140, 98, 87, 156, 93, 107, 105, 109, 90), BloodPressure = c(72,
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62, 70, 66, 0, 55, 84, 58, 62, 64, 60, 80, 82, 68, 70, 72, 72,
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39, 30, 22, 8, 18), Insulin = c(0, 0, 0, 94, 168, 0, 88, 0, 543,
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0, 0, 167, 0, 54, 249, 325, 0, 0, 0, 293, 83, 0, 0, 66, 140,
465, 89, 66, 94, 158, 325, 84, 75, 0, 72, 82, 0, 182, 59), BMI = c(33.6,
26.6, 23.3, 28.1, 43.1, 25.6, 31, 35.3, 30.5, 0, 37.6, 38, 27.1,
30.1, 25.8, 30, 45.8, 29.6, 43.3, 34.6, 39.3, 35.4, 39.8, 29,
36.6, 31.1, 39.4, 23.2, 22.2, 34.1, 36, 31.6, 24.8, 19.9, 27.6,
24, 33.2, 32.9, 38.2, 37.1, 34, 40.2, 22.7, 45.4, 27.4, 42, 29.7,
28, 39.1, 0, 19.4, 24.2, 24.4, 33.7, 34.7, 23, 37.7, 46.8, 40.5,
41.5, 0, 32.9, 25, 25.4, 32.8, 29, 32.5, 42.7, 19.6, 28.9, 32.9,
28.6, 43.4, 35.1, 32, 24.7, 32.6, 37.7, 43.2, 25, 22.4, 0, 29.3,
24.6, 48.8, 32.4, 36.6, 38.5, 37.1, 26.5, 19.1, 32, 46.7, 23.8,
24.7, 33.9, 31.6, 20.4, 28.7, 49.7, 39, 26.1, 22.5, 26.6, 39.6,
28.7, 22.4, 29.5, 34.3, 37.4, 33.3, 34, 31.2, 34, 30.5, 31.2,
34, 33.7, 28.2, 23.2, 53.2, 34.2, 33.6, 26.8, 33.3, 55, 42.9,
33.3, 34.5, 27.9, 29.7, 33.3, 34.5, 38.3, 21.1, 33.8, 30.8, 28.7,
31.2, 36.9, 21.1, 39.5, 32.5, 32.4, 32.8, 0, 32.8, 30.5, 33.7,
27.3, 37.4, 21.9, 34.3, 40.6, 47.9, 50, 24.6, 25.2, 29, 40.9,
29.7, 37.2, 44.2, 29.7, 31.6, 29.9, 32.5, 29.6, 31.9, 28.4, 30.8,
35.4, 28.9, 43.5, 29.7, 32.7, 31.2, 67.1, 45, 39.1, 23.2, 34.9,
27.7, 26.8, 27.6, 35.9, 30.1, 32, 27.9, 31.6, 22.6, 33.1, 30.4,
52.3, 24.4, 39.4, 24.3, 22.9, 34.8, 30.9, 31, 40.1, 27.3, 20.4,
37.7, 23.9, 37.5, 37.7, 33.2, 35.5, 27.7, 42.8, 34.2, 42.6, 34.2,
41.8, 35.8, 30, 29, 37.8, 34.6, 31.6, 25.2, 28.8, 23.6, 34.6,
35.7, 37.2, 36.7, 45.2, 44, 46.2, 25.4, 35, 29.7, 43.6, 35.9,
44.1, 30.8, 18.4, 29.2, 33.1, 25.6, 27.1, 38.2, 30, 31.2, 52.3,
35.4, 30.1, 31.2, 28, 24.4, 35.8, 27.6, 33.6, 30.1, 28.7, 25.9,
33.3, 30.9, 30, 32.1, 32.4, 32, 33.6, 36.3, 40, 25.1, 27.5, 45.6,
25.2, 23, 33.2, 34.2, 40.5, 26.5, 27.8, 24.9, 25.3, 37.9, 35.9,
32.4, 30.4, 27, 26, 38.7, 45.6, 20.8, 36.1, 36.9, 36.6, 43.3,
40.5, 21.9, 35.5, 28, 30.7, 36.6, 23.6, 32.3, 31.6, 35.8, 52.9,
21, 39.7, 25.5, 24.8, 30.5, 32.9, 26.2, 39.4, 26.6, 29.5, 35.9,
34.1, 19.3, 30.5, 38.1, 23.5, 27.5, 31.6, 27.4, 26.8, 35.7, 25.6,
35.1, 35.1, 45.5, 30.8, 23.1, 32.7, 43.3, 23.6, 23.9, 47.9, 33.8,
31.2, 34.2, 39.9, 25.9, 25.9, 32, 34.7, 36.8, 38.5, 28.7, 23.5,
21.8, 41, 42.2, 31.2, 34.4, 27.2, 42.7, 30.4, 33.3, 39.9, 35.3,
36.5, 31.2, 29.8, 39.2, 38.5, 34.9, 34, 27.6, 21, 27.5, 32.8,
38.4, 0, 35.8, 34.9, 36.2, 39.2, 25.2, 37.2, 48.3, 43.4, 30.8,
20, 25.4, 25.1), DiabetesPedigreeFunction = c(0.627, 0.351, 0.672,
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0.256, 0.709, 0.471, 0.495, 0.18, 0.542, 0.773, 0.678, 0.37,
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0.244, 0.745, 0.615, 1.321, 0.64, 0.361, 0.142, 0.374, 0.383,
0.578, 0.136, 0.395, 0.187, 0.678, 0.905, 0.15, 0.874, 0.236,
0.787, 0.235, 0.324, 0.407, 0.605, 0.151, 0.289, 0.355, 0.29,
0.375, 0.164, 0.431, 0.26, 0.742, 0.514, 0.464, 1.224, 0.261,
1.072, 0.805, 0.209, 0.687, 0.666, 0.101, 0.198, 0.652, 2.329,
0.089, 0.645, 0.238, 0.583, 0.394, 0.293, 0.479, 0.586, 0.686,
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0.427, 0.282, 0.143, 0.38, 0.284, 0.249, 0.238, 0.926, 0.543,
0.557, 0.092, 0.655, 1.353, 0.299, 0.761, 0.612, 0.2, 0.226,
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0.251, 0.677, 0.296, 0.454, 0.744, 0.881, 0.334, 0.28, 0.262,
0.165, 0.259, 0.647, 0.619, 0.808, 0.34, 0.263, 0.434, 0.757,
1.224, 0.613, 0.254, 0.692, 0.337, 0.52, 0.412, 0.84, 0.839,
0.422, 0.156, 0.209, 0.207, 0.215, 0.326, 0.143, 1.391, 0.875,
0.313, 0.605, 0.433, 0.626, 1.127, 0.315, 0.284, 0.345, 0.15,
0.129, 0.527, 0.197, 0.254, 0.731, 0.148, 0.123, 0.692, 0.2,
0.127, 0.122, 1.476, 0.166, 0.282, 0.137, 0.26, 0.259, 0.932,
0.343, 0.893, 0.331, 0.472, 0.673, 0.389, 0.29, 0.485, 0.349,
0.654, 0.187, 0.279, 0.346, 0.237, 0.252, 0.243, 0.58, 0.559,
0.302, 0.962, 0.569, 0.378, 0.875, 0.583, 0.207, 0.305, 0.52,
0.385, 0.499, 0.368, 0.252, 0.306, 0.234, 2.137, 1.731, 0.545,
0.225, 0.816, 0.528, 0.299, 0.509, 0.238, 1.021, 0.821, 0.236,
0.947, 1.268), Age = c(50, 31, 32, 21, 33, 30, 26, 29, 53, 54,
30, 34, 57, 59, 51, 32, 31, 31, 33, 32, 27, 50, 41, 29, 51, 41,
43, 22, 57, 38, 60, 28, 22, 28, 45, 33, 35, 46, 27, 56, 26, 37,
48, 54, 40, 25, 29, 22, 31, 24, 22, 26, 30, 58, 42, 21, 41, 31,
44, 22, 21, 39, 36, 24, 42, 32, 38, 54, 25, 27, 28, 26, 42, 23,
22, 22, 41, 27, 26, 24, 22, 22, 36, 22, 37, 27, 45, 26, 43, 24,
21, 34, 42, 60, 21, 40, 24, 22, 23, 31, 33, 22, 21, 24, 27, 21,
27, 37, 25, 24, 24, 46, 23, 25, 39, 61, 38, 25, 22, 21, 25, 24,
23, 69, 23, 26, 30, 23, 40, 62, 33, 33, 30, 39, 26, 31, 21, 22,
29, 28, 55, 38, 22, 42, 23, 21, 41, 34, 65, 22, 24, 37, 42, 23,
43, 36, 21, 23, 22, 47, 36, 45, 27, 21, 32, 41, 22, 34, 29, 29,
36, 29, 25, 23, 33, 36, 42, 26, 47, 37, 32, 23, 21, 27, 40, 41,
60, 33, 31, 25, 21, 40, 36, 40, 42, 29, 21, 23, 26, 29, 21, 28,
32, 27, 55, 27, 57, 52, 21, 41, 25, 24, 60, 24, 36, 38, 25, 32,
32, 41, 21, 66, 37, 61, 26, 22, 26, 24, 31, 24, 22, 46, 22, 29,
23, 26, 51, 23, 32, 27, 21, 22, 22, 33, 29, 49, 41, 23, 34, 23,
42, 27, 24, 25, 44, 21, 30, 25, 24, 51, 34, 27, 24, 63, 35, 43,
25, 24, 21, 28, 38, 21, 40, 21, 52, 25, 29, 23, 57, 22, 28, 39,
37, 47, 52, 51, 34, 29, 26, 33, 21, 25, 31, 24, 65, 28, 29, 24,
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